PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.342870.2
Common NameCsa_3G866510, LOC101216825
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARF
Protein Properties Length: 967aa    MW: 106651 Da    PI: 5.0526
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.342870.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.82.4e-24149250199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        + ++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F   +++
  Cucsa.342870.2 149 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytM-QPPT-QELIVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFI--RDE 239
                     99*********************999*****954.4444.38************************************************..457 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++v+r+
  Cucsa.342870.2 240 KSQLLIGVRRA 250
                     7778****997 PP

2Auxin_resp113.52e-37275358183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPra++seFv++++k++k ++ +++s+GmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
  Cucsa.342870.2 275 AAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYgTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 358
                     79*********************************99*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.05E-46136278IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-42142263IPR015300DNA-binding pseudobarrel domain
CDDcd100171.35E-22148249No hitNo description
SMARTSM010191.7E-24149251IPR003340B3 DNA binding domain
PfamPF023621.1E-21149250IPR003340B3 DNA binding domain
PROSITE profilePS5086313.084149251IPR003340B3 DNA binding domain
PfamPF065071.9E-32275358IPR010525Auxin response factor
PROSITE profilePS5174521.836852936IPR000270PB1 domain
PfamPF023098.6E-9863939IPR033389AUX/IAA domain
SuperFamilySSF542779.81E-9867931No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 967 aa     Download sequence    Send to blast
MGSVEEKLKT SGGLINNAPQ TNLLDEMKLL KEMQDQSGAR KAINSELWHA CAGPLVSLPH  60
VGSLVYYFPQ GHSEQVAVST KRTATSQIPN YPNLPSQLMC QVQNVTLHAD KDSDEIYAQM  120
SLQPVNSEKD VFLVPDFGLR PSKHPNEFFC KTLTASDTST HGGFSVPRRA AEKLFPPLDY  180
TMQPPTQELI VRDLHDNTWT FRHIYRGQPK RHLLTTGWSL FVGAKRLRAG DSVLFIRDEK  240
SQLLIGVRRA NRQQTTLPSS VLSADSMHIG VLAAAAHAAA NRSPFTIFYN PRACPSEFVI  300
PLAKYRKCVY GTQLSAGMRF GMMFETEESG KRRYMGTIVG ISDLDPLRWP GSKWRNLQVE  360
WDEPGCCDKQ NRVSSWEIET PESLFIFPSL TSGLKRPLHG GFLGETDWGS LVKRPMLRVP  420
ENIRGDLSYA PTLCSEPLMK MLLRPQMVNL NGTTLQQDST NNLVKIQDMK DMQNPKMQQL  480
IPTETASPGN QNQHHPGPAQ SDPINPNSSP KANVPGKVQT SVAIESEAPT AADGDKAKYD  540
RDLSASTNQS NPLPPVGGCA EEKLTSNEMN MQTLVNQLSF VNQNQIPMQL QSVSWPMQPQ  600
LESLIQHPQP IDMPQPEYTN SNGLISSLDG DGCLINPSCL PLPGVMRSPG NLSMLGLQDS  660
STVFPEVLNF PLPSTGQDMW DPLNNIRFSS QTNHLISFSH ADASNLNCMA NANIMRDVSD  720
ESNNQSGIYS CSNLEMSNGG STLVDHAVSS TILDDYCTLK DADFPHPSDC LAGNFSSSQD  780
VQSQITSASL GDSQAFSRQE FHDNSAGTSS CNVDFDEGSL LQNGSWKQVV PPLRTYTKVG  840
TCDFYFCYFL ELKDTEVQKA GSVGRSIDVT SFKNYDELCS AIECMFGLEG LLNDPRGSGW  900
KLVYVDYEND VLLIGDDPWE EFVSCVRCIR ILSPSEVQQM SEEGMKLLNS AMMQGINCPM  960
SEGGRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.013835392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU3234190.0KU323419.1 UNVERIFIED: Trichosanthes dioica clone TdARF_27 auxin response factor 5-like mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652441.10.0PREDICTED: auxin response factor 5 isoform X2
SwissprotP930240.0ARFE_ARATH; Auxin response factor 5
TrEMBLA0A0A0LE690.0A0A0A0LE69_CUCSA; Auxin response factor
STRINGVIT_18s0001g13930.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]